Journal: Journal of Hematology & Oncology
Article Title: Developing aptamer probes for acute myelogenous leukemia detection and surface protein biomarker discovery
doi: 10.1186/1756-8722-7-5
Figure Lengend Snippet: Aptamer recognition of cultured NB4 and HL60 leukemic cells. (a) . Comparison of aptamer recognition of cultured NB4 and HL60 leukemic cells. Individually synthesized biotin-labelled aptamers and PE-streptavidin were analyzed with flow cytometry in order to compare their ability to recognize NB4 and HL60 cells. Single-stranded library DNA was used as a negative control. The binding of selected aptamers with cells is illustrated as the following: negative control (black); JH6 (green); JH19 (blue); K19 (red). The final concentration of these aptamers in binding buffer was 150 nM. (b) . Determination of the aptamer binding affinities to NB4 cells. The biotin-labeled aptamers and PE-labeled streptavidin were used for the binding assays. The background binding was measured by using unselected single-stranded library DNA. The fluorescence intensity geometric means of bound aptamers was determined by flow cytometry. The equilibrium dissociation constants (Kd) of the fluorescent ligands were obtained by fitting the dependence of specific binding fluorescence intensity on the concentration of the ligands to the Equation Y = Bmax*X/(Kd + X) using the GraphPad Software (San Diego, CA, USA) as described in previous studies .
Article Snippet: NB4 and HL60 human leukemic cell lines were obtained from ATCC (American Type Culture Collection, Manassas, Virginia) and were cultured in RPMI 1640 medium (Thermo Scientific HyClone, South Logan, Utah) supplemented with 10% fetal bovine serum (FBS) (heat inactivated, Thermo Scientific HyClone, South Logan, Utah), and antibiotics (100 units/ml penicillin-Streptomycin from Fisher BioReagents, Fairlawn, NJ).
Techniques: Cell Culture, Comparison, Synthesized, Flow Cytometry, Negative Control, Binding Assay, Concentration Assay, Labeling, Fluorescence, Software